Beyond the Norm: How Comammox Microbes Redefine Nitrification

Professor Michael Wagner
Professor for Microbial Ecology, University of Vienna, Austria, and Distinguished Professor, Aalborg University, Denmark

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Nitrification, the conversion of ammonia via nitrite to nitrate, is carried out by specialized microorganisms called nitrifiers. This process is extremely important for the global biogeochemical nitrogen cycle in virtually all ecosystems, but it plays an ambivalent role in global change. On one hand, nitrification contributes to the emission of the potent greenhouse gas and ozone-depleting substance nitrous oxide and leads to massive fertilizer losses in agriculture, resulting in the eutrophication of water bodies.  On the other hand, nitrification is indispensable as a biological purification step for nutrient removal in wastewater treatment plants, thus protecting water bodies from excessive nitrogen input from wastewater. The discovery of comammox (complete ammonia oxidizers) microbes in 2015 (Daims et al. 2015, van Kessel et al. 2015 both in Nature), has revolutionized our understanding of nitrification, a crucial process in the global nitrogen cycle. Unlike traditional nitrifiers that either oxidize ammonia to nitrite or nitrite to nitrate, comammox bacteria such as Nitrospira inopinata can perform both steps of nitrification in a single cell. Due to their high substrate affinity and growth yield comammox microbes are well adapted to oligotrophic environments and to growth in biofilms (Kits et al. 2017 Nature). Interestingly, comammox microbes produce nitrous oxide (N2O) at lower levels compared to ammonia-oxidizing bacteria and can thus be considered as green nitrifiers (Kits et al. 2019 Nature Communications). Our recent finding that comammox microbes can utilize guanidine as a sole source of energy, reductant, and nitrogen, offers new opportunities for targeted cultivation of these recalcitrant microbes as well as exciting options to reduce agricultural nitrous oxide emissions (Palatinszky et al. 2024 Nature).

About the Speaker

Michael Wagner is full professor for Microbial Ecology at the University of Vienna, Austria and a Distinguished Professor (20%) at Aalborg University, Denmark. He was the founding director of the Centre for Microbiology and Environmental System Science (CeMESS), which is a 2019 founded new faculty at the University of Vienna. His main research interests are single cell methods in microbiology and nitrogen-cycle microbiology. His team developed several innovative chemical imaging methods for directly studying functional properties of individual microbial cells within complex microbiomes. Recently, they spearheaded the application of these techniques to investigate drug-microbe interactions in the human gut. In the nitrogen cycle field, he discovered together with colleagues in 2015 complete nitrifying microbes (so-called comammox organisms) demonstrating that nitrification is not always a two-step process. Subsequently, they showed that comammox organisms are green nitrifiers producing much less nitrous oxide than classical ammonia-oxidizing bacteria. Michael Wagner has been continuously recognized as a highly cited scientist since 2014 and received an ERC Advanced Grant, the Wittgenstein and Schrödinger awards (the highest science awards in Austria), and the Jim Tiedje lifetime achievement award of the International Society for Microbial Ecology (ISME). In 2023 he became director of one of the seven Austrian Clusters of Excellence entitled “Microbiomes drive Planetary Health“ in which 32 PIs from 8 leading Austrian research institutions focus on environmentally and medically relevant microbiomes.

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